Submit a file:
Upload a file from your computer
Use a file from the server
File:
Filename:
{FILES GO HERE}
or
upload a file
Compute matrix based on:
Pearson Correlation
Spearman Correlation
Deconvolution
Signatures on vertical axis
Set the color scale from
to
Metric for sample clustering:
Euclidean Distance
Pearson Correlation
None (Do Not Cluster)
Metric for signature clustering:
Euclidean Distance
Pearson Correlation
None (Do Not Cluster)
Gene selection metric:
Use all genes
Use top genes from each signature
Use all genes upregulated beyond a certain threshold
Use top genes ranked by covariance across the matrix
Number of genes from each signature:
10
25
50
100
250
1000
Minimum fold change:
2
5
10
50
Number of genes:
500
1000
2500
5000
Select signature matrix:
DermDB
Mouse body atlas
Human body atlas
Immgen data
Macrophage perturbation matrix
Human Primary Cell Atlas
Blood Cell Types (WRS)
Cell Types (WRS)
Skin Cell Types (WRS)